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MolDraw: draw chemical structures and reactions, then see them in 3D

How to draw molecules and reaction schemes in LabCanvas MolDraw: atoms, bonds, rings and charges, reaction arrows, structures from PubChem, SMILES, a 3D view of the same molecule, and placing structures in figures.

By LabCanvas team1 min read
LabCanvas MolDraw with a nitrophenyl amide drawn with wedge and hash stereo bonds
MolDraw in LabCanvas. Open it in your browser.
Contents

MolDraw is the chemical drawing app of LabCanvas. Draw molecules with atoms, bonds, rings and charges, write reaction schemes with arrows and conditions, start from any compound on PubChem, and turn the same structure in 3D. Structures go into LabCanvas figures, slides and posters as editable vectors.

What MolDraw is for

  • Skeletal structures for papers and theses, with wedge and hash stereo bonds.
  • Reaction schemes with arrows, reagents and conditions.
  • Structures for figures and graphical abstracts, placed next to science objects and graphs.
  • Checking a structure in 3D before you put it in a figure.

Drawing tools

ToolWhat it does
Atoms and bondsClick to add, drag to draw a chain; single, double, triple, wedge and hash bonds
Rings and groupsBenzene and other rings, common groups from templates
Charges and labelsFormal charges, lone pairs and atom labels
Reaction arrowsForward, equilibrium and retrosynthesis arrows with text above and below
SMILES barShows the SMILES of the drawing; paste SMILES to draw it
3D viewThe same molecule as a 3D model

How to draw a structure and use it in a figure

  1. Open MolDraw, or open it from the Figure editor.
  2. Search PubChem by name to start from a known compound, or draw from scratch.
  3. Clean up the layout, then add charges, stereo bonds and labels.
  4. Turn on the 3D view to check the shape.
  5. Place it in your figure, where it stays editable.

Molecules in the rest of LabCanvas

The Figure editor’s Library has an Online tab that searches PubChem and places compounds as 2D structures or 3D ball-and-stick drawings. The 3D Studio renders molecules, crystals and proteins, and the Protein viewer shows PDB entries.

Hydrogel, a 3D model rendered in the LabCanvas 3D Studio
Hydrogel
Fibre mat, a 3D model rendered in the LabCanvas 3D Studio
Fibre mat
Porous material, a 3D model rendered in the LabCanvas 3D Studio
Porous material

Frequently asked questions

Is MolDraw a ChemDraw alternative?
MolDraw covers the everyday drawing jobs: skeletal structures, rings, charges, stereo bonds and reaction schemes, in the browser and free to start. Structures go straight into LabCanvas figures, slides and posters.
Can I start from an existing compound?
Yes. Search PubChem by name and the structure opens ready to edit. The figure editor’s Library can also place any PubChem compound directly.
Does MolDraw read SMILES?
Yes. The SMILES bar shows the SMILES of what you draw, and you can paste SMILES to get the structure.
Can I see the molecule in 3D?
Yes. The 3D view shows the same molecule as a 3D model; for rendered pictures, open molecules in the 3D Studio.
How do I put a structure in my figure?
Inside the Figure editor, MolDraw opens as a window over the canvas; when you finish, the structure is placed in the figure as an editable vector object.
chemical structure drawingmolecule editorreaction schemeChemDraw alternativeSMILESchemistry

Try it in LabCanvas

Every app is free to start in your browser. Create an account and begin.

Open MolDraw